PUBLICATIONS & AWARDS


JOURNAL ARTICLES:

2024

  1. G. Liu, S. Sohn, C. S. O'Hern, A. Gilbert, and J. Schroers, ``Effective subgrouping enhances machine learning prediction in complex materials science phenomena: Inoue's subgrouping in discovering bulk metallic glasses,'' Acta Materialia 265 (2024) 119590 [pdf]

  2. A. Ton, A. K. MacKeith, M. D. Shattuck, and C. S. O'Hern, ``Mechanical plasticity of cell membranes enhances epithelial wound closure,'' Phys. Rev. Research 6 (2024) L012036 [pdf]

  3. A. T. Grigas, Z. Liu, J. A. Logan, M. D. Shattuck, and C. S. O'Hern, ``Protein folding as a jamming transition,'' submitted to Phys. Rev. Lett. (2024) [pdf]

  4. V. Fotopoulos, C. S. O'Hern, M. D. Shattuck, and A. L. Shluger, ``Modeling the effects of Ti concentration on the mechanical properties of Cu-Ti alloys,'' ACS Omega 9 (2024) 10286 [pdf]

  5. A. T. Grigas, A. Fisher, M. D. Shattuck, and C. S. O'Hern, ``The connection between polymer collapse and the onset of jamming,'' Phys. Rev. E 109 (2024) 034406 [pdf]

  6. Y. Zheng, D. Wang, G. Beeghly, C. Fischbach, M. D. Shattuck, and C. S. O'Hern, ``Computational modeling of the physical features that influence breast cancer invasion into adipose tissue,'' APL Bioengineering 8 (2024) 036104 [pdf]

  7. Z. Liu, A. T. Grigas, J. Sumner, E. Knab, C. M. Davis, and C. S. O'Hern, ``Identifying the minimal sets of distance restraints for FRET-assisted protein structural modeling,'' Protein Science 33 (2024) e5219 [pdf]

  8. M. A. Genuth, D. Jülich, A. T. Ton, E. Guillon, M. D. Shattuck, C. S. O'Hern, and S. A. Holley,``A cadherin-integrin-ECM code for tissue fluidity,'' submitted to Nature Cell Biology (2024) [pdf]

  9. L. Maisuradze, M. C. King, I. V. Surovtsev, S. G. J. Mochrie, M. D. Shattuck, and C. S. O'Hern, ``Identifying topologically associating domains using differential kernels,'' PLoS Computational Biology 20 (2024) e1012221 [pdf]

  10. Y. Cheng, B. F. Lonial, S. Sista, D. J. Meer, A. Hofert, E. R. Weeks, M. D. Shattuck, and C. S. O'Hern, ``Flow and clogging of capillary droplets,'' Soft Matter 20 (2024) 8036 [pdf]

  11. J. Sumner, G. Meng, N. Brandt, A. T. Grigas, A. Córdoba, M. D. Shattuck, and C. S. O'Hern, ``Assessment of scoring functions for computational models of protein-protein interfaces,'' submitted to Protein Science (2024)[pdf]

  12. J. de Anda, S. Kuchma, S. Webster, A. Boromand, K. Lewis, C. Lee, M. Contreras, V. Medeiros Pereira, D. Hogan, C. S. O'Hern, G. O'Toole, and G. Wong, ``How individual P. aeruginosa cells with diverse stator distributions collectively form a heterogeneous macroscopic swarming population,'' mBio 15 (2024) e03322 [pdf]

    2023

  13. G. Liu, S. Sohn, S. A. Kube, A. Raj, A. Mertz, A. Nawano, A. Gilbert, M. D. Shattuck, C. S. O'Hern, and J. Schroers, ``Machine learning versus human learning in predicting glass-forming ability of metallic glasses,'' Acta Materialia 243 (2023) 118497 [pdf]

  14. A. Nawano, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Characterizing the mechanical response of metallic glasses to uniaxial tension using a spring network model,'' Phys. Rev. Materials 7 (2023) 073605 [pdf]

  15. S. Witthaus, A. Parsa, N. Pashine, J. Zhang, A. MacKeith, M. D. Shattuck, J. Bongard, C. S. O'Hern, and R. Kramer-Bottiglio,``Evolution of adaptive force chains in reconfigurable granular metamaterials,'' submitted to Soft Matter (2023) [pdf]

  16. S. Zhang, W. Jin, D. Wang, D. Xu, J. Zhang, M. D. Shattuck, and C. S. O'Hern, ``Local and global measures of the shear moduli of jammed disk packings,'' Phys. Rev. E 107 (2023) 054903 [pdf]

  17. N. Pashine, D. Wang, J. Zhang, S. K. Patiballa, S. Witthaus, M. D. Shattuck, C. S. O'Hern, and R. Kramer-Bottiglio, ``Tessellated granular metamaterials with tunable elastic moduli,'' Extreme Mech. Lett. 63 (2023) 102055 [pdf]

  18. J. Zhang, D. Wang, W. Jin, A. Xia, N. Pashine, R. Kramer-Bottiglio, M. D. Shattuck, and C. S. O'Hern, ``Designing the pressure-dependent shear modulus using tessellated granular metamaterials,'' Phys. Rev. E 108 (2023) 034901 [pdf]

  19. W. Jin, A. Datye, U. D. Schwarz, M. D. Shattuck, and C. S. O'Hern, ``General framework for the mechanical response of metallic glasses during strain-rate-dependent uniaxial compression,'' Phys. Rev. Materials 7 (2023) 105604 [pdf]

    2022

  20. M. Galanis, M. D. Shattuck, C. S. O'Hern, and N. T. Ouellette, ``Directional strengthening and weakening in hydrodynamically sheared granular beds,'' Phys. Rev. Fluids 7 (2022) 013802 [pdf]

  21. Y. Yang, C. S. O'Hern, L. Huang, and Y. Shi, ``The nature of atomic wear from molecular simulations,'' Tribology International 167 (2022) 107418 [pdf]

  22. Y.-C. Hu, W. Jin, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``The glass-forming ability of binary Lennard-Jones systems,'' Phys. Rev. Materials 6 (2022) 075601 [pdf]

  23. J. D. Treado, A. B. Roddy, G. Théroux-Rancourt, C. Ambrose, C. Brodersen, M. D. Shattuck, and C. S. O'Hern, ``Localized growth drives spongy mesophyll morphogenesis,'' J. R. Soc. Interface 19 (2022) 20220602 [pdf]

  24. Y. Cheng, J. D. Treado, B. Lonial, P. Habdas, E. R. Weeks, M. D. Shattuck, and C. S. O'Hern, ``Hopper flows of deformable particles,'' Soft Matter 17 (2022) 8071 [pdf]

  25. A. T. Grigas, Z. Liu, L. Regan, and C. S. O'Hern, ``Core packing of well-defined x-ray and NMR protein structures is the same,'' Protein Science 31 (2022) e4373 [pdf]

    2021

  26. M. Galanis, P. Wang, M. D. Shattuck, C. S. O'Hern, and N. T. Ouellette, ``Onset of grain motion in eroding subaqueous bimodal granular beds,'' Phys. Rev. Fluids 6 (2021) 094301. [pdf]

  27. P. Wang, S. Zhang, P. J. Tuckman, N. T. Ouellette, M. D. Shattuck, and C. S. O'Hern, ``Shear response of granular packings compressed above jamming onset,'' Phys. Rev. E 103 (2021) 022902. [pdf]

  28. D. Wang, J. D. Treado, A. Bormand, B. Norwick, M. P. Murrell, M. D. Shattuck, and C. S. O'Hern, ``The structural, vibrational, and mechanical properties of jammed packings of deformable particles in three dimensions,'' Soft Matter 17 (2021) 9901. [pdf]

  29. J. Zhang, K. VanderWerf, C. Li, S. Zhang, M. D. Shattuck, and C. S. O'Hern, ``Mechanical response of packings of non-spherical particles: A case study of 2D packings of circulo-lines,'' Phys. Rev. E 104 (2021) 014901. [pdf]

  30. J. D. Treado, D. Wang, A. Boromand, M. P. Murrell, M. D. Shattuck, and C. S. O'Hern, ``Bridging particle deformability and collective response in soft solids,'' Phys. Rev. Materials 5 (2021) 055605. [pdf]

  31. W. Jin, A. Datye, U. D. Schwarz, M. D. Shattuck, and C. S. O'Hern, ``Using Delaunay triangularization to characterize non-affine displacement fields during athermal, quasistatic deformation of amorphous solids,'' Soft Matter 17 (2021) 8612. [pdf]

  32. S. Y. Kim, S. Liu, S. Sohn, J. Jacobs, M. D. Shattuck, C. S. O'Hern, J. Schroers, M. Loewenberg, and R. Kramer-Bottiglio, ``Static-state particle fabrication via rapid vitrification of a thixotropic medium,'' Nature Communications 12 (2021) 3768. [pdf]

    2020

  33. K. VanderWerf, A. Boromand, M. D. Shattuck, and C. S. O'Hern, ``Pressure-dependent shear response of jammed packings of spherical particles,'' Phys. Rev. Lett. 124 (2020) 038004. [pdf]

  34. Z. Mei, J. D. Treado, A. T. Grigas, Z. A. Levine, L. Regan, and C. S. O'Hern, ``Analyses of protein cores reveal fundamental differences between solution and crystal structures,'' Proteins: Structure, Function, and Bioinformatics 88 (2020) 1154. [pdf]

  35. Y.-C. Hu, K. Zhang, S. A. Kube, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Glass formation in binary alloys with different atomic symmetries,'' Phys. Rev. Materials 4 (2020) 105602. [pdf]

  36. P. J. Tuckman, K. VanderWerf, Y. Yuan, S. Zhang, J. Zhang, M. D. Shattuck, and C. S. O'Hern, ``Contact network changes in ordered and disordered disk packings,'' Soft Matter 16 (2020) 9443. [pdf]

  37. W. Jin, C. S. O'Hern, C. Radin, M. D. Shattuck, and H. L. Swinney, ``Homogeneous crystallization in cyclically sheared frictionless grains,'' Phys. Rev. Lett. 125 (2020) 258003. [pdf]

  38. A. T. Grigas, Z. Mei, J. D. Treado, Z. A. Levine, L. Regan, and C. S. O'Hern, ``Using physical features of protein core packing to distinguish real proteins from decoys,'' Protein Science 29 (2020) 1931. [pdf]

    2019

  39. Q. Wu, C. Cui, T. Bertrand, C. S. O'Hern, and M. D. Shattuck, ``Active acoustic switches using 2D granular crystals,'' Phys. Rev. E 99 (2019) 062901. [pdf]

  40. Y.-C. Hu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Tuning the glass-forming ability of metallic glasses through energetic frustration,'' Phys. Rev. Materials 3 (2019) 085602. [pdf]

  41. Y. Xie, S. Sohn, M. Wang, H. Xin, Y. Jung, M. D. Shattuck, C. S. O'Hern, J. Schroers, and J. J. Cha, ``Supercluster-coupled crystal growth in metallic glass forming liquids,'' Nature Communications 10 (2019) 915. [pdf]

  42. J. D. Treado, Z. Mei, L. Regan, and C. S. O'Hern, ``Void distributions reveal structural link between jammed packings and protein cores,'' Phys. Rev. E 99 (2019) 022416. [pdf]

  43. A. Boromand, A. Signoriello, J. Lowensohn, C. S. Orellana, E. R. Weeks, F. Ye, M. D. Shattuck, and C. S. O'Hern, ``The role of deformability in determining the structural and mechanical properties of bubbles and emulsions,'' Soft Matter 15 (2019) 5854. [pdf]

  44. F. Xiong, P. Wang, A. H. Clark, T. Bertrand, N. T. Ouellette, M. D. Shattuck, and C. S. O'Hern, ``Comparison of shear and compression jammed packings of frictional disks,'' Granular Matter 21 (2019) 109. [pdf]

  45. M. Fan, A. Nawano, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Intrinsic dissipation mechanisms in metallic glass resonators,'' J. Chem. Phys. 151 (2019) 144506. [pdf]

  46. Y. Yuan, K. VanderWerf, M. D. Shattuck, and C. S. O'Hern, ``Jammed packings of 3D superellipsoids with tunable packing fraction, contact number, and ordering,'' Soft Matter 15 (2019) 9751. [pdf]

  47. D. Das, D. Jülich, J. Schwendinger-Schreck, E. Guillon, A. K. Lawton, N. Dray, T. Emonet, C. S. O'Hern, M. D. Shattuck, and S. A. Holley, ``Organization of embryonic morphogenesis via mechanical information,'' Developmental Cell 49 (2019) 829. [pdf]

    2018

  48. A. Boromand, A. Signoriello, F. Ye, C. S. O'Hern, and M. D. Shattuck, ``Jamming of deformable polygons,'' Phys. Rev. Lett. 121 (2018) 248003. [pdf]

  49. J. Ketkaew, W. Chen, H. Wang, A. Datye, M. Fan, G. Pereira, U. D. Schwarz, Z. Liu, R. Yamada, W. Dmowski, M. D. Shattuck, C. S. O'Hern, T. Egami, E. Bouchbinder, and J. Schroers, ``Mechanical glass transition revealed by the fracture toughness of metallic glasses,'' Nature Communications 9 (2018) 3271. [pdf]

  50. J. C. Gaines, S. Acebes, A. Virrueta, M. Butler, L. Regan, and C. S. O'Hern, ``Comparing side chain packing in soluble proteins, protein-protein interfaces, and transmembrane proteins,'' Proteins: Structure, Function, and Bioinformatics 86 (2018) 581. [pdf]

  51. C. Oi, J. T. Treado, Z. A. Levine, C. S. Lim, K. M. Knecht, Y. Xiong, C. S. O'Hern, and L. Regan, ``A threonine zipper that mediates protein-protein interactions: Structure and prediction,'' Protein Science 27 (2018) 1969. [pdf]

  52. J. Ketkaew, M. Fan, M. D. Shattuck, C. S. O'Hern, and J. Schroers, ``Structural relaxation kinetics defines embrittlement in metallic glasses,'' Scripta Materialia 140 (2018) 21. [pdf]

  53. S. Chen, T. Bertrand, W. Jin, M. D. Shattuck, and C. S. O'Hern, ``Stress anisotropy in shear-jammed packings of frictionless disks,'' Phy. Rev. E 98 (2018) 042906. [pdf]

  54. A. H. Clark, M. D. Shattuck, N. T. Ouellette, and C. S. O'Hern, ``Critical scaling near the yielding transition in granular media,'' Phys. Rev. E 97 (2018) 062901. [pdf]

  55. K. VanderWerf, W. Jin, M. D. Shattuck, and C. S. O'Hern, ``Hypostatic jammed packings of frictionless nonspherical particles,'' Phys. Rev. E 97 (2018) 012909. [pdf]

    2017

  56. M. Mai, M. D. Shattuck, and C. S. O'Hern, ``Sparse reconstruction of systems of ordinary differential equations,'' submitted to Physica D (2017). [pdf]

  57. J. C. Gaines, A. Virrueta, D. A. Buch, S. J. Fleishman, C. S. O'Hern, and L. Regan, ``Collective repacking reveals that the structures of protein cores are uniquely specified by steric repulsive interactions,'' Protein Eng. Des. Sel. 30 (2017) 387. [pdf]

  58. J. Barés, D. Wang, D. Wang, T. Bertrand, C. S. O'Hern, and R.P. Behringer, ``Local and global avalanches in a two-dimensional sheared granular medium,'' Phys. Rev. E 96 (2017) 052902. [pdf]

  59. J. C. Gaines, A. H. Clark, L. Regan, and C. S. O'Hern, ``Packing of protein cores,'' J. Phys.: Condens. Matter 29 (2017) 293001. [pdf]

  60. K. Zhang, C.-C. Kuo, N. See, C. S. O'Hern, and M. Dennin, "Stable small bubble clusters in two-dimensional foams,'' Soft Matter 13 (2017) 4370. [pdf]

  61. Q. Wu, T. Bertrand, M. D. Shattuck, and C. S. O'Hern, ``The response of jammed packings to thermal fluctuations,'' Phys. Rev. E 96 (2017) 062902. [pdf]

  62. A. H. Clark, N. T. Ouellette, M. D. Shattuck, and C. S. O'Hern, ``The role of grain dynamics in determining the onset of sediment transport,'' Phys. Rev. Fluids 2 (2017) 034305. [pdf]

  63. J. C. Salevan, A. H. Clark, M. D. Shattuck, C. S. O'Hern, and N. T. Ouellette, ``Determining the onset of hydrodynamic erosion in turbulent flow,'' Phys. Rev. Fluids 2 (2017) 114302. [pdf]

  64. M. Fan, K. Zhang, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Particle rearrangement and softening contributions to the nonlinear mechanical response of glasses,'' Phys. Rev. E 96 (2017) 032602. [pdf]

  65. M. Fan, M. Wang, K. Zhang, Y. Liu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``The effects of cooling rate on particle rearrangement statistics: Rapidly cooled glasses are more ductile and less reversible,'' Phys. Rev. E 95 (2017) 022611. [pdf]

    66. 2016

  66. T. Bertrand, R. P. Behringer, B. Chakraborty, C. S. O'Hern, and M. D. Shattuck, ``Protocol dependence of the jamming transition,'' Phys. Rev. E 93 (2016) 012901. [pdf]

  67. D. Caballero, A. Virrueta, C. S. O'Hern, and L. Regan, ``Steric interactions alone determine side chain conformations in protein cores,'' Protein Eng. Des. Sel. 29 (2016) 367. [pdf]

  68. J. C. Gaines, W. W. Smith, L. Regan, and C. S. O'Hern, ``Random close packing in protein cores,'' Phys. Rev. E 93 (2016) 032415. [pdf]

  69. C. S. O'Hern, ``Signs of a Gardner transition in a granular glass,'' Physics 9 (2016) 133. [pdf]

  70. A. Virrueta, C. S. O'Hern, and L. Regan, ``Understanding the physical basis for the side chain conformational preferences of Met,'' Proteins: Structure, Function, and Bioinformatics 84 (2016) 900. [pdf]

  71. K. Wang, S. Langevin, C. S. O'Hern, M. D. Shattuck, S. Ogle, A. Forero, J. Morrison, R. Slayden, M. Katze, and M. Kirby, ``Anomaly detection in host signaling pathways for the early prognosis of acute infection,'' PLoS ONE 11 (2016) e0160919. [pdf]

2015

  1. M. Wang, K. Zhang, Z. Li, Y. Liu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Asymmetric crystallization during cooling and heating in model glass-forming systems,'' Phys. Rev. E 91 (2015) 032309. [pdf]

  2. Y. Rokhlenko, K. Zhang, M. Gopinadhan, S. R. Larson, P. W. Majewski, K. G. Yager, P. Gopalan, C. S. O'Hern, and C. O. Osuji ``Magnetic alignment of block copolymer microdomains by intrinsic chain anisotropy,'' Phys. Rev. Lett. 115 (2015) 258302. [pdf]

  3. K. Zhang, M. Fan, Y. Liu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Beyond packing of hard spheres: The effects of core softness, non-additivity, intermediate-range repulsion, and many-body interactions on the glass-forming ability of bulk metallic glasses,'' J. Chem. Phys. 143 (2015) 184502. [pdf]

  4. K. Zhang, Y. Liu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``The glass-forming ability of model metal-metalloid alloys,'' J. Chem. Phys. 142 (2015) 104504. [pdf]

  5. K. Zhang, B. Dice, Y. Liu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``On the origin of multi-component bulk metallic glasses: Atomic size mismatches and de-mixing,'' J. Chem. Phys. 143 (2015) 054501. [pdf]

  6. A. H. Clark, M. D. Shattuck, N. T. Ouellette and C. S. O'Hern, ``Onset and cessation of motion in hydrodynamically sheared granular beds,'' Phys. Rev. E 92 (2015) 042202. [pdf]

  7. M. Mai, K. Wang, G. Huber, M. Kirby, M. D. Shattuck, and C. S. O'Hern, ``Outcome prediction in mathematical models of immune response to infection,'' PLoS ONE 10 (2015) e0135861. [pdf]

  8. Z. Shao, Z. Liu, J. P. Singer, H. Li, Y. Liu, M. Gopinadhan, C. S. O'Hern, C. O. Osuji, and J. Schroers, ``Shear accelerated crystallization in a supercooled atomic liquid,'' Phys. Rev. E 91 (2015) 020301. [pdf]

  9. L. Regan, D. Caballero, M. R. Hinrichsen, A. Virrueta, D. M. Williams, and C. S. O'Hern, ``Protein Design: Past, Present, and Future,'' Biopolymers: Peptide Science 104 (2015) 334. [pdf]

  10. D. Caballero, W. W. Smith, C. S. O'Hern, and L. Regan, ``Equilibrium transitions between side chain conformations in leucine and isoleucine,'' Proteins: Structure, Function, and Bioinformatics 83 (2015) 1488. [pdf]

2014

  1. T. Bertrand, C. F. Schreck, C. S. O'Hern, and M. D. Shattuck, ``Hypo-coordinated solids in particulate media,'' Phys. Rev. E 89 (2014) 062203. [pdf]

  2. K. Wang, V. Bhandari, J. S. Giuliano, Jr., C. S. O'Hern, M. D. Shattuck, and M. Kirby, ``Angiopoietin-1, Angiopoietin-2, and Bicarbonate as diagnostic biomarkers in children with severe sepsis,'' Plos ONE 9 (2014) e108461. [pdf]

  3. K. Zhang, W. W. Smith, M. Wang, Y. Liu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Connection between the packing efficiency of binary hard spheres and the glass-forming ability of bulk metallic glasses,'' Phys. Rev. E 90 (2014) 032311. [pdf]

  4. W. W. Smith, P.-Y. Ho, and C. S. O'Hern, ``Calibrated Langevin dynamics simulations of intrinsically disordered proteins,'' Phys. Rev. E 90 (2014) 042709. [pdf]

  5. A. Q. Zhou, C. S. O'Hern, and L. Regan, ``Predicting the side-chain dihedral angle distributions of non-polar, aromatic, and polar amino acids using hard-sphere models,'' Proteins: Structure, Function, and Bioinformatics 82 (2014) 2574. [pdf]

  6. D. Caballero, J. Määttä, A. Q. Zhou, M. Sammalkorpi, C. S. O'Hern, and L. Regan, ``The intrinsic α-helical and β-sheet preferences: A computational case study of Alanine,'' Protein Science 23 (2014) 970. [pdf]

  7. T. Shen, S. Papanikolaou, C. S. O'Hern, and M. D. Shattuck, ``The statistics of frictional families,'' Phys. Rev. Lett. 113 (2014) 128302. [pdf]

  8. P. Pal, J. Blawzdziewicz, and C. S. O'Hern, ``Quasi-one dimensional models for glassy dynamics,'' submitted to Phys. Rev. E (2014). [pdf]

  9. C. F. Schreck, C. S. O'Hern, and M. D. Shattuck, ``Vibrations of jammed disk packings with Hertzian interactions,'' Granular Matter 16 (2014) 209. [pdf]

2013

  1. B. R. Parry, I. V. Surovtsev, M. T. Cabeen, C. S. O'Hern, E. R. Dufresne, and C. Jacobs-Wagner, ``The bacterial cytoplasm has glass-like properties and is fluidized by metabolic activity,'' Cell 156 (2013) 183. [pdf]

  2. N. Geerts, C. F. Schreck, P. A. Beales, H. Shigematsu, C. S. O'Hern, and T. K. Vanderlick, ``Using DNA-driven assembled phospholipid nanodiscs as a scaffold for gold nanoparticle patterning,'' Langmuir 29 (2013) 13089. [pdf]

  3. S. O'Hara, K. Wang, R. A. Slayden, A. Schenkel, G. Huber, C. S. O'Hern, M. D. Shattuck, and M. Kirby, ``Iterative feature removal yields highly discriminative pathways and supports biological discovery,'' BMC Genomics 14 (2013) 832. [pdf]

  4. K. Wang, V. Bhandari, S. Chepustanova, G. Huber, S. O'Hara, C. S. O'Hern, M. D. Shattuck, and M. Kirby, ``Which biomarkers reveal neonatal sepsis?,'' PloS ONE 8 (2013) e82700. [pdf]

  5. K. Zhang, M. Wang, S. Papanikolaou, Y. Liu, J. Schroers, M. D. Shattuck, and C. S. O'Hern, ``Computational studies of the glass-forming ability of model bulk metallic glasses,'' J. Chem. Phys. 139 (2013) 124503. [pdf]

  6. C. S. O'Hern and M. D. Shattuck, ``Granular Materials: Highly evolved grains,'' Nature Materials 12 (2013) 287. [pdf]

  7. Z. Shao, M. Gopinadhan, G. Kumar, S. Mukherjee, Y. Liu, C. S. O'Hern, J. Schroers, and C. Osuji, ``Size-dependent viscosity in the supercooled liquid state of a bulk metallic glass,'' App. Phys. Lett. 102 (2013) 221901. [pdf]

  8. C. F. Schreck, R. S. Hoy, M. D. Shattuck, and C. S. O'Hern, ``Particle-scale reversibility in athermal particulate media below jamming,'' Phys. Rev. E 88 (2013) 052205. [pdf]

  9. A. Q. Zhou, D. Caballero, C. S. O'Hern, and L. Regan, "New insights into the interdependence between amino acid stereochemistry and protein structure,'' Biophys. J. 105 (2013) 2403. [pdf]

  10. R. S. Hoy, J. Harwayne-Gidansky, and C. S. O'Hern, ``Minimal energy packings of nearly flexible polymers,'' J. Chem. Phys. 138 (2013) 054905. [pdf]

  11. S. Papanikolaou, C. S. O'Hern, and M. D. Shattuck, ``Isostaticity at frictional jamming,'' Phys. Rev. Lett. 110 (2013) 198002.[pdf]

  12. W. Mutoru, W. W. Smith, C. S. O'Hern, and A. Firoozabadi, ``Computational studies of diffusion and molecular clustering in n-alkanes along critical isotherms,'' J. Chem. Phys. 138 (2013) 024317.

2012

  1. T. Shen, C. F. Schreck, B. Chakraborty, D. E. Freed, and C. S. O'Hern, ``Structural relaxation in dense liquids composed of anisotropic particles,'' Phys. Rev. E 86 (2012) 041303. [pdf]

  2. W. W. Smith, C. F. Schreck, N. Hashem, S. Soltani, A. Nath, E. Rhoades, and C. S. O'Hern, ``Molecular simulations of the fluctuating conformational dynamics of intrinsically disordered proteins,'' Phys. Rev. E 86 (2012) 041910. [pdf]

  3. C. F. Schreck, M. Mailman, B. Chakraborty, and C. S. O'Hern, ``Constraints and vibrations in static packings of ellipsoidal particles,'' Phys. Rev. E 85 (2012) 061305. [pdf]

  4. R. S. Hoy, J. Harwayne-Gidansky, and C. S. O'Hern, ``Structure of finite sphere packings via exact enumeration: Implications for colloidal crystal nucleation,'' Phys. Rev. E 85 (2012) 051403. [pdf]

  5. S. S. Ashwin, J. Blawzdziewicz, C. S. O'Hern, and M. D. Shattuck, "Calculations of the basin volumes for mechanically stable packings," Phys. Rev. E 85 (2012) 061307. [pdf]

  6. A. Q. Zhou, C. S. O'Hern, and L. Regan, "The power of hard-sphere models: Explaining side-chain dihedral angle distributions of Thr and Val," Biophys. J. 102 (2012) 2345. [pdf]

  7. T. Shen, C. S. O'Hern, and M. D. Shattuck, ``The contact percolation transition,'' Phys. Rev. E 85 (2012) 011308. [pdf]

  8. L. Kondic, A. Goullet, C. S. O'Hern, M. Kramar, K. Mischaikow, and R. P. Behringer, ``Topology of force networks in compressed granular media,'' Europhys. Lett. 97 (2012) 54001. [pdf]

  9. L. Kondic, X. Fang, W. Losert, C. S. O'Hern, and R. P. Behringer, "Microstructure evolution during impact on granular matter," Phys. Rev. E 85 (2012) 011305. [pdf]

  10. R. S. Hoy and C. S. O'Hern, ``Glassy dynamics of crystallite formation: The role of covalent bonds,'' Soft Matter 8 (2012) 1215.[pdf]

  11. A. Nath, M. Sammalkorpi, D. C. DeWitt, A. J. Trexler, S. Elbaum-Garfinkle, C. S. O'Hern, and E. Rhoades, ``The conformational ensembles of α-synuclein and τ: Combining single-molecule FRET and simulations,'' Biophys. J. 103 (2012) 1940. [pdf]

 

2011

  1. S. F. Liew, J. Yang, H. Noh, C. F. Schreck, E. R. Dufresne, C. S. O'Hern, and H. Cao, ``Photonic band gaps in three-dimensional network structures with short-range order,'' Phys. Rev. A 84 (2011) 063818. [pdf]

  2. A. Q. Zhou, C. S. O'Hern, and L. Regan, ``Revisiting the Ramachandran plot from a new angle,'' Protein Science 20 (2011) 1166. [pdf]

  3. J. D. Forster, J.-Gyu Park, M. Mittal, H. Noh, C. F. Schreck, C. S. O'Hern, H. Cao, E. M. Furst, and E. R. Dufresne, ``Assembly of optical scale dumbbells into dense photonic crystals,'' ACS Nano 5 (2011) 6695. [pdf]

  4. S. F. Liew, J. Forster, H. Noh, C. F. Schreck, V. Saranathan, X. Lu, L. Yang, R. O. Prum, C. S. O'Hern, E. R. Dufresne, and H. Cao, ``Short-range order and near-field effects on optical scattering and structural coloration,'' Optics Express 19 (2011) 8208. [pdf]

  5. C. F. Schreck, T. Bertrand, C. S. O'Hern, and M. D. Shattuck, "Repulsive contact interactions make jammed particulate systems inherently nonharmonic," Phys. Rev. Lett. 107 (2011) 078301. [pdf]

  6. C. F. Schreck, C. S. O'Hern, and L. E. Silbert, "Tuning frictionless disk packings from isostatic to hyperstatic," Phys. Rev. E 84 (2011) 011305. [pdf]

 

2010

  1. J.-K. Yang, C. F. Schreck, H. Noh, S.-F. Liew, M. I. Guy, C. S. O'Hern, and H. Cao, "Photonic band gap effects in two-dimensional polycrystalline and amorphous structures,"Phys. Rev. A 82 (2010) 053838. [pdf]

  2. R. S. Hoy and C. S. O'Hern, "Minimal energy packings and collapse of sticky tangent hard-sphere polymers," Phys. Rev. Lett. 105 (2010) 068001. [pdf]


  3. R. S. Hoy and C. S. O'Hern, ``Viscoplasticity and large-scale chain relaxation in glassy-polymeric strain hardening,'' Phys. Rev. E 82 (2010) 041803. [pdf]


  4. C. F. Schreck, N. Xu, and C. S. O'Hern, "A comparison of jamming behavior in systems composed of dimer- and ellipse-shaped particles", Soft Matter 6 (2010) 2960. [pdf]

  5. J. D. Forster, H. Noh, S. F. Liew, V. Saranathan, C. Schreck, L. Yang, J.-G. Park, R. O. Prum, C. S. O'Hern, S. G. J. Mochrie, H. Cao, and E. R. Dufresne, "Biomimetic isotropic nanostructures for structural coloration", Advanced Materials 22 (2010) 2939. [pdf]

  6. G. Lois, J. Blawzdziewicz, and C. S. O'Hern, "Protein folding on rugged energy landscapes: Conformational diffusion on fractal networks", Phys. Rev. E 81 (2010) 051907. [pdf]

 

2009

  1. G.-J. Gao, J. Blawzdziewicz, and C. S. O'Hern, "Geometrical families of mechanically stable granular packings", Phys. Rev. E 80 (2009) 061303.[pdf]

  2. G. Lois, J. Xie, T. Majmudar, S. Henkes, B. Chakraborty, C. S. O'Hern, and R. P. Behringer, "Stress correlations in granular materials: An entropic formulation", Phys. Rev. E 80 (2009) 060303(R).[pdf]

  3. G.-J. Gao, J. Blawzdziewicz, C. S. O'Hern, and M. Shattuck, "Experimental demonstration of nonuniform frequency distributions of granular packings", Phys. Rev. E 80 (2009) 061304.[pdf]

  4. M. Mailman, C. F. Schreck, B. Chakraborty, and C. S. O'Hern, "Jamming in Systems Composed of Frictionless Ellipse-Shaped Particles", Phys. Rev. Lett. 102 (2009) 255501.[pdf]

  5. G. Lois, J. Blawzdziewicz, and C. S. O'Hern, "A percolation model for glassy dynamics in disordered materials", Phys. Rev. Lett. 102 (2009) 015702.[pdf]

  6. M. Lundberg, K. Krishan, N. Xu, C. S. O'Hern, and M. Dennin, "Comparison of low-amplitude oscillatory shear in experimental and computational studies of model foams", Phys. Rev. E 79 (2009) 041405. [pdf]

 

2008

  1. P. Pal, C. S. O'Hern, J. Blawzdziewicz, E. R. Dufresne, and R. Stinchcombe, "A minimal model for kinetic arrest", Phys. Rev. E 78 (2008) 011111. [pdf]

  2. G. Lois, J. Blawzdziewicz, and C. S. O'Hern, "Reliable Protein Folding on Complex Energy Landscapes: The Free Energy Reaction Path", Biophys. J. 95 (2008) 2692. [pdf]

  3. M. Lundberg, K. Krishan, N. Xu, C. S. O'Hern, and M. Dennin, "Reversible plasticity in amorphous materials", Phys. Rev. E 77 (2008) 041505. [pdf]

  4. A. L. Cortajarena, G. Lois, E. Sherman, C. S. O'Hern, L. Regan, and G. Haran, "Non-random-coil behavior as a consequence of extensive PPII structure in the denatured state", J. Mol. Biol. 382 (2008) 203. [pdf]

 

2007

  1. G. Lois, J. Blawzdziewicz, and C. S. O'Hern, "Jamming Transition and New Percolation Universality Classes in Particulate Systems with Attraction", Phys. Rev. Lett. 100 (2007) 028001. [pdf]

  2. S. Henkes, C. S. O'Hern, and B. Chakraborty, "Entropy and Temperature of a Static Granular Assembly: An Ab Initio Approach", Phys. Rev. Lett. 99 (2007) 038002. [pdf]

  3. G.-J. Gao, J. Blawzdziewicz, and C. S. O'Hern, "Enumeration of distinct mechanically stable disk packings in small systems", Phil. Mag. B 87 (2007) 425. [pdf]

 

2006

  1. G.-J. Gao, J. Blawzdziewicz, and C. S. O'Hern, "Studies of the frequency distribution of mechanically stable disk packings", Phys. Rev. E 74 (2006) 061304. [pdf]

  2. N. Xu and C. S. O'Hern, "Measurements of the yield stress in frictionless granular systems", Phys. Rev. E 73 (2006) 061303. [pdf]

 

2005

  1. N. Xu, C. S. O'Hern, and L. Kondic, "Stabilization of nonlinear velocity profiles in athermal systems undergoing planar shear flow", Phys. Rev. E 72 (2005) 041504. [pdf]

  2. N. Xu, J. Blawzdziewicz, and C. S. O'Hern, "Reexamination of random close packing: Ways to pack frictionless disks", Phys. Rev. E 71 (2005) 061306. [pdf]

  3. N. Xu and C. S. O'Hern, "Effective Temperature in Athermal Systems Sheared at Fixed Normal Load", Phys. Rev. Lett. 94 (2005) 055701. [pdf]

  4. N. Xu, C. S. O'Hern, and L. Kondic, "Velocity Profiles in Repulsive Athermal Systems under Shear", Phys. Rev. Lett. 94 (2005) 016001. [pdf]

 

PRIOR TO 2005

  1. C. S. O'Hern, A. J. Liu, and S. R. Nagel, "Effective Temperatures in Driven Systems: Static Versus Time-Dependent Relations", Phys. Rev. Lett. 93 (2004) 165702. [pdf]

  2. C. S. O'Hern, L. E. Silbert, A. J. Liu, and S. R. Nagel, "Jamming at zero temperature and zero applied stress: The epitome of disorder", Phys. Rev. E 68 (2003) 011306. [pdf]

  3. I. K. Ono, C.S. O'Hern, D. J. Durian, S. A. Langer, A. J. Liu, and S. R. Nagel, "Effective Temperatures of a Driven System Near Jamming", Phys. Rev. Lett. 89 (2002) 095703. [pdf]

  4. C.S. O'Hern, S. A. Langer, A. J. Liu, and S. R. Nagel, "Random Packings of Frictionless Particles", Phys. Rev. Lett. 88 (2002) 075507. [pdf]

  5. C.S. O'Hern, S. A. Langer, A. J. Liu, and S. R. Nagel, "Force Distributions near Jamming and Glass Transitions'', Phys. Rev. Lett. 86(2001) 111. [pdf]

  6. L. Golubovic, T. C. Lubensky, and C. S. O'Hern. "Structural properties of the sliding columnar phase in layered liquid crystalline systems'', Phys. Rev. E 62 (2000) 1069. [pdf]

  7. C.S. O'Hern, T. C. Lubensky, and J. Toner, "Sliding Phases in XY Models, Crystals, and Cationic Lipid-DNA Complexes'', Phys. Rev. Lett. 83 (1999) 2745. [pdf]

  8. C. S. O'Hern and T.C. Lubensky, "Sliding Columnar Phase of DNA-Lipid Complexes'', Phys. Rev. Lett. 80 (1998) 4345. [pdf]

  9. C.S. O'Hern and T. C. Lubensky, "Nonlinear elasticity of the sliding columnar phase'', Phys. Rev. E 58 (1998) 5948. [pdf]

  10. C. S. O'Hern, R. D. Kamien, T.C. Lubensky, and P. Nelson, "Elasticity theory of a twisted stack of plates'', European Physical Journal B 1 (1998) 95. [pdf]

  11. R. D. Kamien, T.C. Lubensky, C. S. O'Hern, and Philip Nelson, "Direct determination of DNA twist-stretch coupling'', Europhys. Lett. 38 (1997) 237. [pdf]

  12. C. S. O'Hern, D. A. Egolf, and H. S. Greenside, "Lyapunov spectral analysis of a nonequilibrium Ising-like transition'', Phys. Rev. E 53 (1996) 3374. [pdf]

  13. Brian Miller, C. O'Hern, and R. P. Behringer, "Stress Fluctuations for Continuously Sheared Granular Materials'', Phys. Rev. Lett. 77 (1996) 3110. [pdf]


CONFERENCE PROCEEDINGS:

  1. L. Kondic, C. S. O'Hern, and R. P. Behringer, ``Dense granular systems: From theory to Applications'', Siam News, 40 (2007) 13.

  2. G.-J. Gao, J. Blawzdziewicz, and C. S. O'Hern, ``Testing the equal-probability assumption for jammed particle packings'', Reports of the Institute of Fluid Science, Tohoku University, 19 (2007) 23.

  3. N. Xu and C. S. O'Hern, ``Effective temperatures in repulsive glasses sheared at fixed normal load'', Powders and Grains, eds. R. Garcia-Rojo, H. J. Hermann, and S. McNamara, (A. A. Balkema, Leiden, 2005).

  4. C.S. O'Hern, Stephen A. Langer, Andrea J. Liu, and S. R. Nagel, ``Jamming in liquids and granular materials'', Materials Research Society Proceedings, The Granular State, 627 (2000) BB1.1.

  5. C. S. O'Hern, R. D. Kamien, T. C. Lubensky, and P. Nelson, ``Twist-stretch elasticity of DNA'', Materials Research Society Proceedings, Statistical Mechanics in Physics and Biology, 463 (1997) 43. [pdf]

BOOK CHAPTERS:

  1. C. S. O'Hern, ``Jamming in Granular Materials'', in Handbook of Granular Materials, ed. by M. D. Shattuck and S. F. Franklin (CRC Press, New York, 2012).

  2. C. F. Schreck and C. S. O'Hern, "Computational methods to study jammed systems", in Experimental and Computational Techniques in Soft Condensed Matter Physics, ed. by J. S. Olafsen, (Cambridge University Press, New York, 2010). [pdf]

  3. A. K. MacKeith, D. Wang, M. D. Shattuck, and C. S. O'Hern, "Deformable particles: Modelling and applications", in Packing problems in soft matter physics: Fundamentals and applications, ed. by H.-K. Chan, S. Hutzler, A. Mughal, C. S. O'Hern, Y. Wang, and D. Weaire, (Royal Society of Chemistry, Cambridge, UK, 2024). [pdf]

AWARDS:

  • 2017: Fellow of the American Physical Society

  • 2011: Chair of the American Physical Society's Topical Group on Statistical and Nonlinear Physics

  • 2011: APS-IUSSTF Professorship Award in Physics

  • 2008-2012:  NSF Cyber-Enabled Discovery and Innovation Award

  • 2005-2010:  NSF Faculty Early Career Development Award

  • 2002:  Finalist, University of California  Chancellor's Award for Postdoctoral Research

  • 1999: Granted National Research Council Postdoctoral Research Associateship at the Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC (declined)

  • 1994: Graduated summa cum laude and with highest distinction in Physics from Duke University

  • 1994: Inducted into Phi Beta Kappa, Duke University

Prof. Corey O'Hern | Department of Mechanical Engineering & Materials Science | Department of Applied Physics | Department of Physics |
Graduate Program in Computational Biology & Bioinformatics | Integrated Graduate Program in Physical & Engineering Biology | Yale University

Email: corey.ohern [at] yale.edu | Url: http://jamming.research.yale.edu | Office Phone: 203-432-4258 | Lab Phone: 203-436-1318 | Fax: 203-432-7654

U.S. Postal Address: Department of Mechanical Engineering | Yale University | P. O. Box 208286 | New Haven, CT 06520-8286

Shipping Address: 9 Hillhouse Avenue | Mason Laboratory, Room 203 | New Haven, CT 06511-6815